Samples App

The samples application models the uid.models.Sample objects views and updates.

samples.forms

samples.forms module contents

Created on Thu Feb 7 15:38:46 2019

@author: Paolo Cozzi <cozzi@ibba.cnr.it>

class samples.forms.UpdateSampleForm(sample, *args, **kwargs)

Bases: common.forms.RequestFormMixin, django.forms.models.ModelForm

class Meta

Bases: object

fields = ('disabled_name', 'alternative_id', 'description', 'disabled_animal', 'protocol', 'collection_date', 'collection_place', 'collection_place_latitude', 'collection_place_longitude', 'collection_place_accuracy', 'organism_part', 'developmental_stage', 'physiological_stage', 'animal_age_at_collection', 'animal_age_at_collection_units', 'availability', 'storage', 'storage_processing', 'preparation_interval', 'preparation_interval_units')

model

alias of uid.models.Sample

__init__(sample, *args, **kwargs)

Initialize self. See help(type(self)) for accurate signature.

base_fields = {'alternative_id': <django.forms.fields.CharField object>, 'animal_age_at_collection': <django.forms.fields.IntegerField object>, 'animal_age_at_collection_units': <django.forms.fields.TypedChoiceField object>, 'availability': <django.forms.fields.CharField object>, 'collection_date': <django.forms.fields.DateField object>, 'collection_place': <django.forms.fields.CharField object>, 'collection_place_accuracy': <django.forms.fields.TypedChoiceField object>, 'collection_place_latitude': <django.forms.fields.FloatField object>, 'collection_place_longitude': <django.forms.fields.FloatField object>, 'description': <django.forms.fields.CharField object>, 'developmental_stage': <django.forms.models.ModelChoiceField object>, 'disabled_animal': <django.forms.fields.CharField object>, 'disabled_name': <django.forms.fields.CharField object>, 'organism_part': <django.forms.models.ModelChoiceField object>, 'physiological_stage': <django.forms.models.ModelChoiceField object>, 'preparation_interval': <django.forms.fields.IntegerField object>, 'preparation_interval_units': <django.forms.fields.TypedChoiceField object>, 'protocol': <django.forms.fields.CharField object>, 'storage': <django.forms.fields.TypedChoiceField object>, 'storage_processing': <django.forms.fields.TypedChoiceField object>}

clean()

Hook for doing any extra form-wide cleaning after Field.clean() has been called on every field. Any ValidationError raised by this method will not be associated with a particular field; it will have a special-case association with the field named ‘__all__’.

declared_fields = {'disabled_animal': <django.forms.fields.CharField object>, 'disabled_name': <django.forms.fields.CharField object>}

property media

Return all media required to render the widgets on this form.

samples.tasks

samples.tasks module contents

Created on Wed Feb 27 16:38:37 2019

@author: Paolo Cozzi <cozzi@ibba.cnr.it>

class samples.tasks.BatchDeleteSamples(*args, **kwargs)

Bases: submissions.tasks.SubmissionTaskMixin, common.tasks.NotifyAdminTaskMixin, common.tasks.BaseTask

action = 'batch delete samples'

description = 'Batch remove samples'

name = 'Batch delete samples'

run(submission_id, sample_ids)

Function for batch update attribute in animals :param submission_id: id of submission :type submission_id: int :param sample_ids: set with ids to delete :type sample_ids: list

class samples.tasks.BatchUpdateSamples(*args, **kwargs)

Bases: submissions.tasks.BatchUpdateMixin, common.tasks.NotifyAdminTaskMixin, common.tasks.BaseTask

action = 'batch update samples'

description = 'Batch update of field in samples'

item_cls

alias of uid.models.Sample

name = 'Batch update samples'

run(submission_id, sample_ids, attribute)

Function for batch update attribute in samples :param submission_id: id of submission :type submission_id: int :param sample_ids: dict with id and values to update :type sample_ids: dict :param attribute: attribute to update :type attribute: str

samples.views

samples.views module contents

Created on Fri Feb 15 16:25:59 2019

@author: Paolo Cozzi <cozzi@ibba.cnr.it>

class samples.views.DeleteSampleView(**kwargs)

Bases: common.views.DeleteMaterialMixin, django.views.generic.edit.DeleteView

delete(request, *args, **kwargs)

Calls the delete() method on the fetched object, does all stuff and then redirects to the success URL.

model

alias of uid.models.Sample

template_name = 'samples/sample_confirm_delete.html'

class samples.views.DetailSampleView(**kwargs)

Bases: common.views.DetailMaterialMixin, django.views.generic.detail.DetailView

model

alias of uid.models.Sample

template_name = 'samples/sample_detail.html'

class samples.views.ListSampleView(**kwargs)

Bases: common.views.ListMaterialMixin, django.views.generic.list.ListView

model

alias of uid.models.Sample

ordering = ['submission']

paginate_by = 10

template_name = 'samples/sample_list.html'

class samples.views.UpdateSampleView(**kwargs)

Bases: common.views.UpdateMaterialMixin, django.views.generic.edit.UpdateView

form_class

alias of samples.forms.UpdateSampleForm

get_initial()

Returns the initial data to use for forms on this view.

model

alias of uid.models.Sample

template_name = 'samples/sample_form.html'

validationresult_class

alias of validation.models.ValidationResult